The complete genome of hydrocarbon-degrading <i>Pseudoal-teromonas</i> sp. NJ289 and its phylogenetic relationship

LIU Fangming; WANG Yibin; QU Changfeng; ZHENG Zhou; MIAO Jinlai; XU Hua; XIAO Tian

doi:10.1007/s13131-017-0979-1

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Article Navigation > Acta Oceanologica Sinica > 2017 > 36(2): 88-93

LIU Fangming, WANG Yibin, QU Changfeng, ZHENG Zhou, MIAO Jinlai, XU Hua, XIAO Tian. The complete genome of hydrocarbon-degrading Pseudoal-teromonas sp. NJ289 and its phylogenetic relationship[J]. Acta Oceanologica Sinica, 2017, 36(2): 88-93. doi: 10.1007/s13131-017-0979-1

Citation:

LIU Fangming, WANG Yibin, QU Changfeng, ZHENG Zhou, MIAO Jinlai, XU Hua, XIAO Tian. The complete genome of hydrocarbon-degrading Pseudoal-teromonas sp. NJ289 and its phylogenetic relationship[J]. Acta Oceanologica Sinica, 2017, 36(2): 88-93. doi: 10.1007/s13131-017-0979-1

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The complete genome of hydrocarbon-degrading Pseudoal-teromonas sp. NJ289 and its phylogenetic relationship

doi: 10.1007/s13131-017-0979-1

1.
Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China;University of Chinese Academy of Sciences, Beijing 100049, China;The First Institute of Oceanography, State Oceanic Administration, Qingdao 266061, China
2.
The First Institute of Oceanography, State Oceanic Administration, Qingdao 266061, China
3.
Key Laboratory of Sustainable Development of Marine Fisheries of Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China
4.
Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China

Received Date: 2015-11-01
Rev Recd Date: 2016-02-18

Abstract

Abstract

Genus Pseudoalteromonas belongs to Family Pseudoalteromonadaceae in Gammaproteobacteria. A cold-adapted gram-negative bacterium, hydrocarbon-degrading Pseudoalteromonas sp. NJ289, was isolated from sea-ice of the Antarctica region, and sequenced the whole genome through the next generation sequencing platform. The assembly yielded three contigs representing two chromosomes and one plasmid with the sizes of 3.2 Mb, 636 kb and 1.8 kb, respectively. The G+C contents of genome were 40.83% and included 3 589 ORFs. Functional annotation indicated some potential roles in enzymatic activity and environmental adaptability. This study may help for understanding the population diverse, evolutionary ecology and the microbial interaction.
- Pseudoalteromonas,
- low temperature,
- environmental adaptability,
- sequencing,
- phylogenetic tree

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References(22)

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