Citation: | Yueyun Wang, Hong Cheng, Chunsheng Wang. A new eyeless species of Nicon (Annelida: Nereididae) from the deep Northwest Pacific Ocean[J]. Acta Oceanologica Sinica, 2021, 40(12): 20-26. doi: 10.1007/s13131-021-1886-z |
[1] |
Alves P R, Halanych K M, Santos C S G. 2020. The phylogeny of Nereididae (Annelida) based on mitochondrial genomes. Zoologica Scripta, 49(3): 366–378. doi: 10.1111/zsc.12413
|
[2] |
Bakken T, Wilson R S. 2005. Phylogeny of nereidids (Polychaeta, Nereididae) with paragnaths. Zoologica Scripta, 34(5): 507–547. doi: 10.1111/j.1463-6409.2005.00200.x
|
[3] |
Bankevich A, Nurk S, Antipov D, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol, 19(5): 455–477. doi: 10.1089/cmb.2012.0021
|
[4] |
Bonyadi-Naeini A, Rastegar-Pouyani N, Rastegar-Pouyani E, et al. 2017. Nereididae (Annelida: Phyllodocida) of the Persian Gulf and Gulf of Oman, including description of two new species and 11 new records. Zootaxa, 4244(1): 91–117. doi: 10.11646/zootaxa.4244.1.5
|
[5] |
Chernomor O, von Haeseler A, Minh B Q. 2016. Terrace aware data structure for phylogenomic inference from supermatrices. Systematic Biology, 65(6): 997–1008. doi: 10.1093/sysbio/syw037
|
[6] |
Conde-Vela V M, Wu Xuwen. 2019. Revision of Sinonereis Wu & Sun, 1979 (Annelida: Nereididae). Zoosystema, 41(1): 153–161. doi: 10.5252/zoosystema2019v4a9
|
[7] |
Conde-Vela V M, Wu Xuwen, Salazar-Vallejo S I. 2018. Reevaluation and new species of Kainonereis Chamberlin, 1919 (Annelida: Polychaeta: Nereididae). Zoological Studies, 57: e6
|
[8] |
de León-González J A, Trovant B. 2013. A new species of Nicon Kinberg, 1866 (Polychaeta, Nereididae) from Ecuador, Eastern Pacific, with a key to all known species of the genus. ZooKeys, 269: 67–76. doi: 10.3897/zookeys.269.4003
|
[9] |
Fauchald K. 1972. Benthic polychaetous annelids from deep water off western Mexico and adjacent areas in the eastern Pacific Ocean. Allan Hancock Monographs in Marine Biology, 7: 1–575
|
[10] |
Fitzhugh K. 1987. Phylogenetic relationships within the Nereididae (Polychaeta): implications at the subfamily level. Bulletin of the Biological Society of Washington, 7: 174–183
|
[11] |
Gonzalez B C, Martínez A, Borda E, et al. 2018. Phylogeny and systematics of Aphroditiformia. Cladistics, 34(3): 225–259. doi: 10.1111/cla.12202
|
[12] |
Hartman O. 1960. Systematic account of some marine invertebrate animals from the deep basins off southern California. Allan Hancock Pacific Expeditions, 22: 69–216
|
[13] |
Hartman O. 1967. Polychaetous annelids collected by the USNS Eltanin and Staten Island cruises, chiefly from Antarctic seas. Allan Hancock Monographs in Marine Biology, 2: 1–387
|
[14] |
Hartman O, Fauchald K. 1971. Deep-water benthic polychaetous annelids off New England to Bermuda and other north Atlantic areas Part II. Allan Hancock Monographs in Marine Biology, 6: 1–327
|
[15] |
Kirkegaard J B. 1995. Bathyal and abyssal polychaetes (errant species). Galathea Report, 17: 7–56
|
[16] |
Lanave C, Preparata G, Saccone C, et al. 1984. A new method for calculating evolutionary substitution rates. Journal of Molecular Evolution, 20(1): 86–93. doi: 10.1007/BF02101990
|
[17] |
Monro C C A. 1930. Polychaete worms. Discovery Reports, 2: 1–222
|
[18] |
Nguyen L T, Schmidt H A, von Haeseler A, et al. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution, 32(1): 268–274. doi: 10.1093/molbev/msu300
|
[19] |
Norlinder E, Nygren A, Wiklund H, et al. 2012. Phylogeny of scale-worms (Aphroditiformia, Annelida), assessed from 18SrRNA, 28SrRNA, 16SrRNA, mitochondrial cytochrome c oxidase subunit I (COI), and morphology. Molecular Phylogenetics and Evolution, 65(2): 490–500. doi: 10.1016/j.ympev.2012.07.002
|
[20] |
Paterson G L J, Glover A G, Barrio Froján C R S, et al. 2009. A census of abyssal polychaetes. Deep Sea Research Part II: Topical Studies in Oceanography, 56(19−20): 1739–1746. doi: 10.1016/j.dsr2.2009.05.018
|
[21] |
Santos C S G, Pleijel F, Lana P, et al. 2005. Phylogenetic relationships within Nereididae (Annelida: Phyllodocida). Invertebrate Systematics, 19(6): 557–576. doi: 10.1071/IS05001
|
[22] |
Shimabukuro M, Santos C S G, Alfaro-Lucas J M, et al. 2017. A new eyeless species of Neanthes (Annelida: Nereididae) associated with a whale-fall community from the deep Southwest Atlantic Ocean. Deep Sea Research Part II: Topical Studies in Oceanography, 146: 27–34. doi: 10.1016/j.dsr2.2017.10.013
|
[23] |
Silvestro D, Michalak I. 2012. raxmlGUI: a graphical front-end for RAxML. Organisms Diversity & Evolution, 12(4): 335–337
|
[24] |
Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30(9): 1312–1313. doi: 10.1093/bioinformatics/btu033
|
[25] |
Yang Ziheng. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. Journal of Molecular Evolution, 39(3): 306–314. doi: 10.1007/BF00160154
|
[26] |
Zhang Yanjie, Sun Jin, Chen Chong, et al. 2017. Adaptation and evolution of deep-sea scale worms (Annelida: Polynoidae): insights from transcriptome comparison with a shallow-water species. Scientific Reports, 7(1): 46205. doi: 10.1038/srep46205
|