Citation: | Linbin Zhou, Yehui Tan, Liangmin Huang. Coral reef ecological pump for gathering and retaining nutrients and exporting carbon: a review and perspectives[J]. Acta Oceanologica Sinica, 2023, 42(6): 1-15. doi: 10.1007/s13131-022-2130-1 |
Albuquerque T, Loiola M, de Anchieta C C Nunes J, et al. 2015. In situ effects of human disturbances on coral reef-fish assemblage structure: temporary and persisting changes are reflected as a result of intensive tourism. Marine and Freshwater Research, 66(1): 23–32. doi: 10.1071/MF13185
|
Alldredge A L, Carlson C A, Carpenter R C. 2013. Sources of organic carbon to coral reef flats. Oceanography, 26(3): 108–113. doi: 10.5670/oceanog.2013.52
|
Allgeier J E, Burkepile D E, Layman C A. 2017. Animal pee in the sea: consumer-mediated nutrient dynamics in the world’s changing oceans. Global Change Biology, 23(6): 2166–2178. doi: 10.1111/gcb.13625
|
Allgeier J E, Layman C A, Mumby P J, et al. 2014. Consistent nutrient storage and supply mediated by diverse fish communities in coral reef ecosystems. Global Change Biology, 20(8): 2459–2472. doi: 10.1111/gcb.12566
|
Allgeier J E, Speare K E, Burkepile D E. 2018. Estimates of fish and coral larvae as nutrient subsidies to coral reef ecosystems. Ecosphere, 9(6): e02216
|
Allgeier J E, Valdivia A, Cox C, et al. 2016. Fishing down nutrients on coral reefs. Nature Communications, 7: 12461. doi: 10.1038/ncomms12461
|
Andradi-Brown D A, Banaszak A T, Frazer T K, et al. 2020. Editorial: coral reefs in the anthropocene—Reflecting on 20 years of reef conservation UK. Frontiers in Marine Science, 7: 364. doi: 10.3389/fmars.2020.00364
|
Apprill A. 2020. The role of symbioses in the adaptation and stress responses of marine organisms. Annual Review of Marine Science, 12: 291–314. doi: 10.1146/annurev-marine-010419-010641
|
Atkinson M J. 1987. Rates of phosphate uptake by coral reef flat communities. Limnology and Oceanography, 32(2): 426–435. doi: 10.4319/lo.1987.32.2.0426
|
Atkinson M J. 1992. Productivity of Enewetak Atoll reef flats predicted from mass transfer relationships. Continental Shelf Research, 12(7–8): 799–807
|
Atkinson M J. 2011. Biogeochemistry of nutrients. In: Dubinsky Z, Stambler N, eds. Coral Reefs: An Ecosystem in Transition. Dordrecht: Springer, 199–206
|
Atkinson M J, Falter J L. 2003. Coral reefs. In: Black K D, Shimmield G B, eds. Biogeochemistry of Marine Systems. Oxford: Blackwell Publishing, 40–64
|
Azam F, Fenchel T, Field J G, et al. 1983. The ecological role of water-column microbes in the sea. Marine Ecology Progress Series, 10: 257–263. doi: 10.3354/meps010257
|
Baquiran J I P, Conaco C. 2018. Sponge-microbe partnerships are stable under eutrophication pressure from mariculture. Marine Pollution Bulletin, 136: 125–134. doi: 10.1016/j.marpolbul.2018.09.011
|
Bates N R. 2002. Seasonal variability of the effect of coral reefs on seawater CO2 and air-sea CO2 exchange. Limnology and Oceanography, 47(1): 43–52. doi: 10.4319/lo.2002.47.1.0043
|
Benavides M, Houlbrèque F, Camps M, et al. 2016. Diazotrophs: a non-negligible source of nitrogen for the tropical coral Stylophora pistillata. Journal of Experimental Biology, 219(17): 2608–2612
|
Benkwitt C E, Wilson S K, Graham N A J. 2020. Biodiversity increases ecosystem functions despite multiple stressors on coral reefs. Nature Ecology & Evolution, 4(7): 919–926
|
Berkström C, Eggertsen L, Goodell W, et al. 2020. Thresholds in seascape connectivity: the spatial arrangement of nursery habitats structure fish communities on nearby reefs. Ecography, 43(6): 882–896. doi: 10.1111/ecog.04868
|
Biegala I C, Raimbault P. 2008. High abundance of diazotrophic picocyanobacteria (<3 µm) in a Southwest Pacific coral lagoon. Aquatic Microbial Ecology, 51: 45–53. doi: 10.3354/ame01185
|
Bonnin L, Robbins W D, Boussarie G, et al. 2019. Repeated long-range migrations of adult males in a common Indo-Pacific reef shark. Coral Reefs, 38(6): 1121–1132. doi: 10.1007/s00338-019-01858-w
|
Borsa P, Richer De Forges B, Baudat-Franceschi J. 2018. Keep cruises off remote coral reefs. Nature, 558: 372-372
|
Bouillon S, Connolly R M. 2009. Carbon exchange among tropical coastal ecosystems. In: Nagelkerken I, ed. Ecological Connectivity among Tropical Coastal Ecosystems. Dordrecht: Springer, 45–70
|
Brandl S J, Tornabene L, Goatley C H R, et al. 2019. Demographic dynamics of the smallest marine vertebrates fuel coral reef ecosystem functioning. Science, 364(6446): 1189–1192. doi: 10.1126/science.aav3384
|
Brocke H J, Piltz B, Herz N, et al. 2018. Nitrogen fixation and diversity of benthic cyanobacterial mats on coral reefs in Curaçao. Coral Reefs, 37(3): 861–874. doi: 10.1007/s00338-018-1713-y
|
Brocke H J, Wenzhoefer F, de Beer D, et al. 2015. High dissolved organic carbon release by benthic cyanobacterial mats in a Caribbean reef ecosystem. Scientific Reports, 5: 8852. doi: 10.1038/srep08852
|
Burkepile D E, Allgeier J E, Shantz A A, et al. 2013. Nutrient supply from fishes facilitates macroalgae and suppresses corals in a Caribbean coral reef ecosystem. Scientific Reports, 3: 1493. doi: 10.1038/srep01493
|
Callaghan D P, Nielsen P, Cartwright N, et al. 2006. Atoll lagoon flushing forced by waves. Coastal Engineering, 53: 691–704
|
Carballo J L, Cruz-Barraza J A, Vega C, et al. 2019. Sponge diversity in Eastern Tropical Pacific coral reefs: an interoceanic comparison. Scientific Reports, 9(1): 9409. doi: 10.1038/s41598-019-45834-4
|
Cardini U, Bednarz V N, van Hoytema N, et al. 2016. Budget of primary production and dinitrogen fixation in a highly seasonal Red Sea coral reef. Ecosystems, 19(5): 771–785. doi: 10.1007/s10021-016-9966-1
|
Charpy L, Dufour P, Garcia N. 1997. Particulate organic matter in sixteen Tuamotu atoll lagoons (French Polynesia). Marine Ecology Progress Series, 151: 55–65. doi: 10.3354/meps151055
|
Chen Xiaoyan, Yu Kefu, Huang Xueyong, et al. 2019. Atmospheric nitrogen deposition increases the possibility of macroalgal dominance on remote coral reefs. Journal of Geophysical Research: Biogeosciences, 124(5): 1355–1369. doi: 10.1029/2019JG005074
|
Costa M B, Macedo E C, Valle-Levinson A, et al. 2017. Wave and tidal flushing in a near-equatorial mesotidal atoll. Coral Reefs, 36(1): 277–291. doi: 10.1007/s00338-016-1525-x
|
Crossland C J, Hatcher B G, Smith S V. 1991. Role of coral reefs in global ocean production. Coral Reefs, 10(2): 55–64. doi: 10.1007/BF00571824
|
Cuet P, Atkinson M J, Blanchot J, et al. 2011. CNP budgets of a coral-dominated fringing reef at La Réunion, France: coupling of oceanic phosphate and groundwater nitrate. Coral Reefs, 30(1): 45–55
|
Darwin C R. 1842. The structure and distribution of coral reefs. Being the first part of the geology of the voyage of the Beagle, under the command of Capt. In: Fitzroy R N, ed. During the Years 1832 to 1836. London: Smith Elder and Co.
|
Davis S E, Lirman D, Wozniak J R. 2009. Nitrogen and phosphorus exchange among tropical coastal ecosystems. In: Nagelkerken I, ed. Ecological Connectivity Among Tropical Coastal Ecosystems. Dordrecht: Springer, 9–44
|
de Goeij J M, van Oevelen D, Vermeij M J A, et al. 2013. Surviving in a marine desert: the sponge loop retains resources within coral reefs. Science, 342(6154): 108–110. doi: 10.1126/science.1241981
|
de Paula Y C, Schiavetti A, Sampaio C L S, et al. 2018. The effects of fish feeding by visitors on reef fish in a Marine Protected Area open to tourism. Biota Neotropica, 18(3): e20170339
|
Delesalle B, Buscail R, Carbonne J, et al. 1998. Direct measurements of carbon and carbonate export from a coral reef ecosystem (Moorea Island, French Polynesia). Coral Reefs, 17(2): 121–132. doi: 10.1007/s003380050106
|
den Haan J, Visser P M, Ganase A E, et al. 2014. Nitrogen fixation rates in algal turf communities of a degraded versus less degraded coral reef. Coral Reefs, 33(4): 1003–1015. doi: 10.1007/s00338-014-1207-5
|
Derville S, Torres L G, Dodémont R, et al. 2019. From land and sea, long-term data reveal persistent humpback whale (Megaptera novaeangliae) breeding habitat in New Caledonia. Aquatic Conservation: Marine and Freshwater Ecosystems, 29(10): 1697–1711. doi: 10.1002/aqc.3127
|
Diaz-Pulido G, Barrón C. 2020. CO2 enrichment stimulates dissolved organic carbon release in coral reef macroalgae. Journal of Phycology, 56(4): 1039–1052. doi: 10.1111/jpy.13002
|
Doty M S, Oguri M. 1956. The island mass effect. ICES Journal of Marine Science, 22(1): 33–37. doi: 10.1093/icesjms/22.1.33
|
Du Jianguo, Xie Meiling, Wang Yuyu, et al. 2020. Connectivity of fish assemblages along the mangrove-seagrass-coral reef continuum in Wenchang, China. Acta Oceanologica Sinica, 39(8): 43–52. doi: 10.1007/s13131-019-1490-7
|
Dudgeon S, Kübler J E. 2020. A multistressor model of carbon acquisition regulation for macroalgae in a changing climate. Limnology and Oceanography, 65(10): 2541–2555. doi: 10.1002/lno.11470
|
Duran A, Collado-Vides L, Burkepile D E. 2016. Seasonal regulation of herbivory and nutrient effects on macroalgal recruitment and succession in a Florida coral reef. PeerJ, 4: e2643. doi: 10.7717/peerj.2643
|
Edgar G J, Stuart-Smith R D. 2014. Systematic global assessment of reef fish communities by the Reef Life Survey program. Scientific Data, 1: 140007. doi: 10.1038/sdata.2014.7
|
Elsner J B, Kossin J P, Jagger T H. 2008. The increasing intensity of the strongest tropical cyclones. Nature, 455: 92–95
|
Erler D V, Santos I R, Eyre B D. 2014. Inorganic nitrogen transformations within permeable carbonate sands. Continental Shelf Research, 77: 69–80. doi: 10.1016/j.csr.2014.02.002
|
Eyre B D, Glud R N, Patten N. 2008. Mass coral spawning: a natural large-scale nutrient addition experiment. Limnology and Oceanography, 53: 997–1013
|
Fabricius K E. 2005. Effects of terrestrial runoff on the ecology of corals and coral reefs: review and synthesis. Marine Pollution Bulletin, 50(2): 125–146. doi: 10.1016/j.marpolbul.2004.11.028
|
Ferrier-Pagès C, Gattuso J P, Cauwet G, et al. 1998. Release of dissolved organic carbon and nitrogen by the zooxanthellate coral Galaxea fascicularis. Marine Ecology Progress Series, 172: 265–274. doi: 10.3354/meps172265
|
Ferrier-Pagès C, Leclercq N, Jaubert J, et al. 2000. Enhancement of pico- and nanoplankton growth by coral exudates. Aquatic Microbial Ecology, 21: 203–209. doi: 10.3354/ame021203
|
Ferrier-Pagès C, Sauzéat L, Balter V. 2018. Coral bleaching is linked to the capacity of the animal host to supply essential metals to the symbionts. Global Change Biology, 24: 3145–3157
|
Fiore C L, Jarett J K, Olson N D, et al. 2010. Nitrogen fixation and nitrogen transformations in marine symbioses. Trends in Microbiology, 18(10): 455–463. doi: 10.1016/j.tim.2010.07.001
|
Fitt W K, McFarland F K, Warner M E, et al. 2000. Seasonal patterns of tissue biomass and densities of symbiotic dinoflagellates in reef corals and relation to coral bleaching. Limnology and Oceanography, 45(3): 677–685. doi: 10.4319/lo.2000.45.3.0677
|
Ford A K, Van Hoytema N, Moore B R, et al. 2017. High sedimentary oxygen consumption indicates that sewage input from small islands drives benthic community shifts on overfished reefs. Environmental Conservation, 44(4): 405–411. doi: 10.1017/S0376892917000054
|
Fox M D, Elliott Smith E A, Smith J E, et al. 2019. Trophic plasticity in a common reef-building coral: insights from δ13C analysis of essential amino acids. Functional Ecology, 33(11): 2203–2214. doi: 10.1111/1365-2435.13441
|
Francis F T, Cȏté I M. 2018. Fish movement drives spatial and temporal patterns of nutrient provisioning on coral reef patches. Ecosphere, 9(5): e02225
|
Friedlander A M, Obura D, Aumeeruddy R, et al. 2014. Coexistence of low coral cover and high fish biomass at Farquhar Atoll, Seychelles. PLoS ONE, 9(1): e87359. doi: 10.1371/journal.pone.0087359
|
Furnas M J, Mitchell A W, Skuza M. 1995. Nitrogen and Phosphorus Budgets for the Central Great Barrier Reef Shelf. Towmsville Queensland: Great Barrier Reef Marine Park Authority
|
Gattuso J P, Frankignoulle M, Smith S V. 1999. Measurement of community metabolism and significance in the coral reef CO2 source-sink debate. Proceedings of the National Academy of Sciences of the United States of America, 96(23): 13017–13022. doi: 10.1073/pnas.96.23.13017
|
Geesey G G, Alexander G V, Bray R N, et al. 1984. Fish fecal pellets are a source of minerals for inshore reef communities. Marine Ecology Progress Series, 15: 19–25. doi: 10.3354/meps015019
|
Genin A, Monismith S G, Reidenbach M A, et al. 2009. Intense benthic grazing of phytoplankton in a coral reef. Limnology and Oceanography, 54(3): 938–951. doi: 10.4319/lo.2009.54.3.0938
|
Goatley C H R, Bellwood D R. 2016. Body size and mortality rates in coral reef fishes: a three-phase relationship. Proceedings of the Royal Society B: Biological Sciences, 283(1841): 20161858. doi: 10.1098/rspb.2016.1858
|
Godinot C, Gaysinski M, Thomas O P, et al. 2016. On the use of 31P NMR for the quantification of hydrosoluble phosphorus-containing compounds in coral host tissues and cultured zooxanthellae. Scientific Reports, 6: 21760. doi: 10.1038/srep21760
|
González-Dávila M, Casiano J M S, Machín F. 2017. Changes in the partial pressure of carbon dioxide in the Mauritanian-Cap Vert upwelling region between 2005 and 2012. Biogeosciences, 14(17): 3859–3871. doi: 10.5194/bg-14-3859-2017
|
Gove J M, McManus M A, Neuheimer A B, et al. 2016. Near-island biological hotspots in barren ocean basins. Nature Communications, 7: 10581. doi: 10.1038/ncomms10581
|
Graham N A J, Nash K L. 2013. The importance of structural complexity in coral reef ecosystems. Coral Reefs, 32(2): 315–326. doi: 10.1007/s00338-012-0984-y
|
Graham N A J, Wilson S K, Carr P, et al. 2018. Seabirds enhance coral reef productivity and functioning in the absence of invasive rats. Nature, 559(7713): 250–253. doi: 10.1038/s41586-018-0202-3
|
Gray S E C, DeGrandpre M D, Langdon C, et al. 2012. Short-term and seasonal pH, pCO2 and saturation state variability in a coral-reef ecosystem. Global Biogeochemical Cycles, 26(3): GB3012
|
Green R H, Jones N L, Rayson M D, et al. 2019. Nutrient fluxes into an isolated coral reef atoll by tidally driven internal bores. Limnology and Oceanography, 64(2): 461–473. doi: 10.1002/lno.11051
|
Green A L, Maypa A P, Almany G R, et al. 2015. Larval dispersal and movement patterns of coral reef fishes, and implications for marine reserve network design. Biological Reviews, 90(4): 1215–1247. doi: 10.1111/brv.12155
|
Grover R, Ferrier-Pagès C, Maguer J F, et al. 2014. Nitrogen fixation in the mucus of Red Sea corals. Journal of Experimental Biology, 217(22): 3962–3963
|
Gruber R K, Lowe R J, Falter J L. 2018. Benthic uptake of phytoplankton and ocean-reef exchange of particulate nutrients on a tide-dominated reef. Limnology and Oceanography, 63(4): 1545–1561. doi: 10.1002/lno.10790
|
Haas A F, Fairoz M F M, Kelly L W, et al. 2016. Global microbialization of coral reefs. Nature Microbiology, 1: 16042
|
Hadaidi G, Gegner H M, Ziegler M, et al. 2019. Carbohydrate composition of mucus from scleractinian corals from the central Red Sea. Coral Reefs, 38(1): 21–27. doi: 10.1007/s00338-018-01758-5
|
Hamner W M, Colin P L, Hamner P P. 2007. Export-import dynamics of zooplankton on a coral reef in Palau. Marine Ecology Progress Series, 334: 83–92
|
Hamner W M, Jones M S, Carleton J H, et al. 1988. Zooplankton, planktivorous fish, and water currents on a windward reef face: Great Barrier Reef, Australia. Bulletin of Marine Science, 42(3): 459–479
|
Hata H, Kudo S, Yamano H, et al. 2002. Organic carbon flux in Shiraho coral reef (Ishigaki Island, Japan). Marine Ecology Progress Series, 232: 129–140. doi: 10.3354/meps232129
|
Hata H, Suzuki A, Maruyama T, et al. 1998. Carbon flux by suspended and sinking particles around the barrier reef of Palau, western Pacific. Limnology and Oceanography, 43(8): 1883–1893. doi: 10.4319/lo.1998.43.8.1883
|
Hatcher B G. 1988. Coral reef primary productivity: a beggar’s banquet. Trends in Ecology & Evolution, 3(5): 106–111
|
Hatcher B G. 1997. Coral reef ecosystems: how much greater is the whole than the sum of the parts?. Coral Reefs, 16: S77–S91
|
Hernández-León S. 1991. Accumulation of mesozooplankton in a wake area as a causative mechanism of the “island-mass effect”. Marine Biology, 109(1): 141–147. doi: 10.1007/BF01320241
|
Heupel M R, Papastamatiou Y P, Espinoza M, et al. 2019. Reef shark science—key questions and future directions. Frontiers in Marine Science, 6: 12. doi: 10.3389/fmars.2019.00012
|
Hoer D R, Gibson P J, Tommerdahl J P, et al. 2018. Consumption of dissolved organic carbon by Caribbean reef sponges. Limnology and Oceanography, 63(1): 337–351. doi: 10.1002/lno.10634
|
Honig S E, Mahoney B. 2016. Evidence of seabird guano enrichment on a coral reef in Oahu, Hawaii. Marine Biology, 163(2): 22. doi: 10.1007/s00227-015-2808-4
|
Houlbrèque F, Ferrier-Pagès C. 2009. Heterotrophy in tropical scleractinian corals. Biological Reviews, 84(1): 1–17. doi: 10.1111/j.1469-185X.2008.00058.x
|
Huang Liangmin. 1991. Characteristics of photosynthetic pigments and primary productivity distribution in the waters around Nansha Islands (In Chinese with English abstract). In: Chen Q, Ed. Mutidisciplinary Expedition to Nansha Islands Chinese Academy of Sciences, eds. Proceedings of Studies on Marine Organisms in Nansha Islands and Adjacent Waters II. Beijing: China Ocean Press, 34–49
|
Huang Liangmin. 1997. A Study on Ecological Processes of Nansha Islands Sea Area I (in Chinese). Beijing: Science Press
|
Huang Liangmin, Tan Yehui, Song Xingyu, et al. 2020. A Study on Ecological Processes of Nansha Islands Sea Area (in Chinese). Beijing: Science Press
|
Ikawa H, Faloona I, Kochendorfer J, et al. 2013. Air-sea exchange of CO2 at a Northern California coastal site along the California Current upwelling system. Biogeosciences, 10(7): 4419–4432. doi: 10.5194/bg-10-4419-2013
|
James A K, Washburn L, Gotschalk C, et al. 2020. An island mass effect resolved near Mo’orea, French Polynesia. Frontiers in Marine Science, 7: 16. doi: 10.3389/fmars.2020.00016
|
Jantzen C, Wild C, Rasheed M, et al. 2010. Enhanced pore-water nutrient fluxes by the upside-down jellyfish Cassiopea sp. in a Red Sea coral reef. Marine Ecology Progress Series, 411: 117–125. doi: 10.3354/meps08623
|
Jiang Wei, Yang Haodan, Wu Xingyuan, et al. 2020. Research progress of environmental influence and coral record of submarine groundwater discharge in coral reefs. Haiyang Xuebao (In Chinese with English Abstract), 42(11): 1–11. doi: 10.3969/j.issn.0253-4193.2020.11.001
|
Johannes R E, Alberts J, D’Elia C, et al. 1972. The metabolism of some coral reef communities: a team study of nutrient and energy flux at Eniwetok. BioScience, 22(9): 541–543. doi: 10.2307/1296314
|
Johannes R E, Coles S L, Kuenzel N T. 1970. The role of zooplankton in the nutrition of some scleractinian corals. Limnology and Oceanography, 15(4): 579–586. doi: 10.4319/lo.1970.15.4.0579
|
Karcher D B, Roth F, Carvalho S, et al. 2020. Nitrogen eutrophication particularly promotes turf algae in coral reefs of the central Red Sea. PeerJ, 8: e8737. doi: 10.7717/peerj.8737
|
Karnauskas K B, Cohen A L. 2012. Equatorial refuge amid tropical warming. Nature Climate Change, 2: 530–534
|
Kayanne H, Suzuki A, Saito H. 1995. Diurnal changes in the partial pressure of carbon dioxide in coral reef water. Science, 269(5221): 214–216. doi: 10.1126/science.269.5221.214
|
Ke Zhixin, Tan Yehui, Huang Liangmin, et al. 2018. Spatial distribution patterns of phytoplankton biomass and primary productivity in six coral atolls in the central South China Sea. Coral Reefs, 37(3): 919–927. doi: 10.1007/s00338-018-1717-7
|
Kealoha A K, Shamberger K E F, Reid E C, et al. 2019. Heterotrophy of oceanic particulate organic matter elevates net ecosystem calcification. Geophysical Research Letters, 46(16): 9851–9860. doi: 10.1029/2019GL083726
|
Khan J A, Goatley C H R, Brandl S J, et al. 2017. Shelter use by large reef fishes: long-term occupancy and the impacts of disturbance. Coral Reefs, 36(4): 1123–1132. doi: 10.1007/s00338-017-1604-7
|
Kinsey D W, Hopley D. 1991. The significance of coral reefs as global carbon sinks—response to Greenhouse. Global and Planetary Change, 3(4): 363–377. doi: 10.1016/0921-8181(91)90117-F
|
Kossin J P, Knapp K R, Olander T L, et al. 2020. Global increase in major tropical cyclone exceedance probability over the past four decades. Proceedings of the National Academy of Sciences of the United States of America, 117(22): 11975–11980. doi: 10.1073/pnas.1920849117
|
Kötter I. 2003. Feeding ecology of coral reef sponges [dissertation]. Bremen: University Bremen, 77
|
Kumagai N H, Molinos J G, Yamano H, et al. 2018. Ocean currents and herbivory drive macroalgae-to-coral community shift under climate warming. Proceedings of the National Academy of Sciences of the United States of America, 115(36): 8990–8995. doi: 10.1073/pnas.1716826115
|
Larkum A W D, Kennedy I R, Muller W J. 1988. Nitrogen fixation on a coral reef. Marine Biology, 98(1): 143–155. doi: 10.1007/BF00392669
|
Lee S, Ford A K, Mangubhai S, et al. 2018. Effects of sandfish (Holothuria scabra) removal on shallow-water sediments in Fiji. PeerJ, 6: e4773. doi: 10.7717/peerj.4773
|
Leichter J J, Stewart H L, Miller S L. 2003. Episodic nutrient transport to Florida coral reefs. Limnology and Oceanography, 48: 1394–1407
|
Lesser M P, Morrow K M, Pankey S M, et al. 2018. Diazotroph diversity and nitrogen fixation in the coral Stylophora pistillata from the Great Barrier Reef. The ISME Journal, 12(3): 813–824. doi: 10.1038/s41396-017-0008-6
|
Leys S P, Yahel G, Reidenbach M A, et al. 2011. The sponge pump: the role of current induced flow in the design of the sponge body plan. PLoS ONE, 6(12): e27787. doi: 10.1371/journal.pone.0027787
|
Liberman T, Genin A, Loya Y. 1995. Effects on growth and reproduction of the coral Stylophora pistillata by the mutualistic damselfish Dascyllus marginatus. Marine Biology, 121(4): 741–746. doi: 10.1007/BF00349310
|
Liu Qingxia, Zhou Linbin, Wu Yun, et al. 2022. Quantification of the carbon released by a marine fish using a carbon release model and radiocarbon. Marine Pollution Bulletin, 181: 113908. doi: 10.1016/j.marpolbul.2022.113908
|
Lønborg C, Calleja M L, Fabricius K E, et al. 2019. The Great Barrier Reef: a source of CO2 to the atmosphere. Marine Chemistry, 210: 24–33. doi: 10.1016/j.marchem.2019.02.003
|
Lønborg C, Doyle J, Furnas M, et al. 2017. Seasonal organic matter dynamics in the Great Barrier Reef lagoon: contribution of carbohydrates and proteins. Continental Shelf Research, 138: 95–105. doi: 10.1016/j.csr.2017.01.010
|
Lorrain A, Houlbrèque F, Benzoni F, et al. 2017. Seabirds supply nitrogen to reef-building corals on remote Pacific islets. Scientific Reports, 7(1): 3721. doi: 10.1038/s41598-017-03781-y
|
Martínez-Moreno J, Hogg A M, England M H, et al. 2021. Global changes in oceanic mesoscale currents over the satellite altimetry record. Nature Climate Change, 11(5): 397–403. doi: 10.1038/s41558-021-01006-9
|
Massaro R F S, De Carlo E H, Drupp P S, et al. 2012. Multiple factors driving variability of CO2 exchange between the ocean and atmosphere in a tropical coral reef environment. Aquatic Geochemistry, 18(4): 357–386. doi: 10.1007/s10498-012-9170-7
|
McMahon A, Santos I R. 2017. Nitrogen enrichment and speciation in a coral reef lagoon driven by groundwater inputs of bird guano. Journal of Geophysical Research: Oceans, 122(9): 7218–7236. doi: 10.1002/2017JC012929
|
McManus M A, Benoit-Bird K J, Brock Woodson C. 2008. Behavior exceeds physical forcing in the diel horizontal migration of the midwater sound-scattering layer in Hawaiian waters. Marine Ecology Progress Series, 365: 91–101. doi: 10.3354/meps07491
|
McMurray S E, Stubler A D, Erwin P M, et al. 2018. A test of the sponge-loop hypothesis for emergent Caribbean reef sponges. Marine Ecology Progress Series, 588: 1–14. doi: 10.3354/meps12466
|
Meunier V, Bonnet S, Pernice M, et al. 2019. Bleaching forces coral’s heterotrophy on diazotrophs and Synechococcus. The ISME Journal, 13(11): 2882–2886. doi: 10.1038/s41396-019-0456-2
|
Meyer J L, Schultz E T. 1985. Tissue condition and growth rate of corals associated with schooling fish. Limnology and Oceanography, 30(1): 157–166. doi: 10.4319/lo.1985.30.1.0157
|
Meyer J L, Schultz E T, Helfman G S. 1983. Fish schools: an asset to corals. Science, 220(4601): 1047–1049. doi: 10.1126/science.220.4601.1047
|
Mueller B, den Haan J, Visser P M, et al. 2016. Effect of light and nutrient availability on the release of dissolved organic carbon (DOC) by Caribbean turf algae. Scientific Reports, 6: 23248. doi: 10.1038/srep23248
|
Nagelkerken I. 2009. Ecological Connectivity Among Tropical Coastal Ecosystems. Dordrecht: Springer
|
Nelson C E, Alldredge A L, McCliment E A, et al. 2011. Depleted dissolved organic carbon and distinct bacterial communities in the water column of a rapid-flushing coral reef ecosystem. The ISME Journal, 5(8): 1374–1387. doi: 10.1038/ismej.2011.12
|
Newman M J H, Paredes G A, Sala E, et al. 2006. Structure of Caribbean coral reef communities across a large gradient of fish biomass. Ecology Letters, 9(11): 1216–1227. doi: 10.1111/j.1461-0248.2006.00976.x
|
Ning Zhiming, Yu Kefu, Wang Yinghui, et al. 2019. Carbon and nutrient dynamics of permeable carbonate and silicate sands adjacent to coral reefs around Weizhou Island in the northern South China Sea. Estuarine, Coastal and Shelf Science, 225: 106229
|
Odum E P, Barrett G W. 2005. Fundamentals of Ecology. 5th ed. Belmont: Thomson Brooks/Cole
|
Odum H T, Odum E P. 1955. Trophic structure and productivity of a windward coral reef community on Eniwetok atoll. Ecological Monographs, 25(3): 291–320. doi: 10.2307/1943285
|
Palacios D M. 2002. Factors influencing the island-mass effect of the Galápagos Archipelago. Geophysical Research Letters, 29(23): 2134
|
Patten N L, Wyatt A S J, Lowe R J, et al. 2011. Uptake of picophytoplankton, bacterioplankton and virioplankton by a fringing coral reef community (Ningaloo Reef, Australia). Coral Reefs, 30(3): 555–567. doi: 10.1007/s00338-011-0777-8
|
Pawlik J R, Loh T L, McMurray S E. 2018. A review of bottom-up vs. top-down control of sponges on Caribbean fore-reefs: what’s old, what’s new, and future directions. PeerJ, 6: e4343. doi: 10.7717/peerj.4343
|
Pawlik J R, McMurray S E. 2020. The emerging ecological and biogeochemical importance of sponges on coral reefs. Annual Review of Marine Science, 12: 315–337
|
Peel L R, Daly R, Daly C A K, et al. 2019. Stable isotope analyses reveal unique trophic role of reef manta rays (Mobula alfredi) at a remote coral reef. Royal Society Open Science, 6(9): 190599. doi: 10.1098/rsos.190599
|
Peirano A, Morri C, Bianchi C N, et al. 2001. Biomass, carbonate standing stock and production of the Mediterranean coral Cladocora caespitosa (L. ). Facies, 44(1): 75–80. doi: 10.1007/BF02668168
|
Pinnegar J K, Polunin N V C. 2006. Planktivorous damselfish support significant nitrogen and phosphorus fluxes to Mediterranean reefs. Marine Biology, 148(5): 1089–1099. doi: 10.1007/s00227-005-0141-z
|
Polovina J J. 1984. Model of a coral reef ecosystem I. The ECOPATH model and its application to French Frigate Shoals. Coral Reefs, 3(1): 1–11. doi: 10.1007/BF00306135
|
Pupier C A, Bednarz V N, Grover R, et al. 2019. Divergent capacity of scleractinian and soft corals to assimilate and transfer diazotrophically derived nitrogen to the reef environment. Frontiers in Microbiology, 10: 1860. doi: 10.3389/fmicb.2019.01860
|
Purcell S W, Conand C, Uthicke S, et al. 2016. Ecological roles of exploited sea cucumbers. In: Hughes R N, Hughes D J, Smith I P, et al., eds. Oceanography and Marine Biology: An Annual Review, Vol. 54. Boca Raton: CRC Press, 367–386
|
Qiu Dajun, Huang Liangmin, Huang Hui, et al. 2010. Two functionally distinct ciliates dwelling in Acropora corals in the South China Sea near Sanya, Hainan Province, China. Applied and Environmental Microbiology, 76(16): 5639–5643. doi: 10.1128/AEM.03009-09
|
Rädecker N, Pogoreutz C, Voolstra C R, et al. 2015. Nitrogen cycling in corals: the key to understanding holobiont functioning?. Trends in Microbiology, 23(8): 490–497
|
Radice V Z, Hoegh-Guldberg O, Fry B, et al. 2019. Upwelling as the major source of nitrogen for shallow and deep reef-building corals across an oceanic atoll system. Functional Ecology, 33(6): 1120–1134. doi: 10.1111/1365-2435.13314
|
Reid S B, Hirota J, Young R E, et al. 1991. Mesopelagic-boundary community in Hawaii: micronekton at the interface between neritic and oceanic ecosystems. Marine Biology, 109(3): 427–440. doi: 10.1007/BF01313508
|
Ribes M, Coma R, Atkinson M J, et al. 2005. Sponges and ascidians control removal of particulate organic nitrogen from coral reef water. Limnology and Oceanography, 50(5): 1480–1489. doi: 10.4319/lo.2005.50.5.1480
|
Rice M M, Maher R L, Vega Thurber R, et al. 2019. Different nitrogen sources speed recovery from corallivory and uniquely alter the microbiome of a reef-building coral. PeerJ, 7: e8056
|
Richardson T L. 2019. Mechanisms and pathways of small-phytoplankton export from the surface ocean. Annual Review of Marine Science, 11: 57–74. doi: 10.1146/annurev-marine-121916-063627
|
Richardson T L, Jackson G A. 2007. Small phytoplankton and carbon export from the surface ocean. Science, 315(5813): 838–840. doi: 10.1126/science.1133471
|
Richter C, Wunsch M, Rasheed M, et al. 2001. Endoscopic exploration of Red Sea coral reefs reveals dense populations of cavity-dwelling sponges. Nature, 413(6857): 726–730. doi: 10.1038/35099547
|
Rix L, de Goeij J M, van Oevelen D, et al. 2017. Differential recycling of coral and algal dissolved organic matter via the sponge loop. Functional Ecology, 31(3): 778–789. doi: 10.1111/1365-2435.12758
|
Rix L, de Goeij J M, van Oevelen D, et al. 2018. Reef sponges facilitate the transfer of coral-derived organic matter to their associated fauna via the sponge loop. Marine Ecology Progress Series, 589: 85–96. doi: 10.3354/meps12443
|
Roopin M, Henry R P, Chadwick N E. 2008. Nutrient transfer in a marine mutualism: patterns of ammonia excretion by anemonefish and uptake by giant sea anemones. Marine Biology, 154(3): 547–556. doi: 10.1007/s00227-008-0948-5
|
Ruiz Sebastián C, McClanahan T R. 2013. Description and validation of production processes in the coral reef ecosystem model CAFFEE (Coral–Algae–Fish-Fisheries Ecosystem Energetics) with a fisheries closure and climatic disturbance. Ecological Modelling, 263: 326–348. doi: 10.1016/j.ecolmodel.2013.05.012
|
Sambrook K, Bonin M C, Bradley M, et al. 2020. Broadening our horizons: seascape use by coral reef-associated fishes in Kavieng, Papua New Guinea, is common and diverse. Coral Reefs, 39(4): 1187–1197. doi: 10.1007/s00338-020-01954-2
|
Sandin S A, Smith J E, Demartini E E, et al. 2008. Baselines and degradation of coral reefs in the northern Line Islands. PLoS ONE, 3(2): e1548. doi: 10.1371/journal.pone.0001548
|
Savage C. 2019. Seabird nutrients are assimilated by corals and enhance coral growth rates. Scientific Reports, 9(1): 4284. doi: 10.1038/s41598-019-41030-6
|
Schöttner S, Pfitzner B, Grünke S, et al. 2011. Drivers of bacterial diversity dynamics in permeable carbonate and silicate coral reef sands from the Red Sea. Environmental Microbiology, 13(7): 1815–1826. doi: 10.1111/j.1462-2920.2011.02494.x
|
Sebens K P, Vandersall K S, Savina L A, et al. 1996. Zooplankton capture by two scleractinian corals, Madracis mirabilis and Montastrea cavernosa, in a field enclosure. Marine Biology, 127(2): 303–317. doi: 10.1007/BF00942116
|
Shantz A A, Ladd M C, Schrack E, et al. 2015. Fish-derived nutrient hotspots shape coral reef benthic communities. Ecological Applications, 25(8): 2142–2152. doi: 10.1890/14-2209.1
|
Sheng Huaxia, Wan X S, Zou Bobo, et al. 2023. An efficient diazotroph-derived nitrogen transfer pathway in coral reef system. Limnology and Oceanography, 68: 963–981
|
Shiozaki T, Kodama T, Furuya K. 2014. Large-scale impact of the island mass effect through nitrogen fixation in the western South Pacific Ocean. Geophysical Research Letters, 41(8): 2907–2913. doi: 10.1002/2014GL059835
|
Silveira C B, Silva-Lima A W, Francini-Filho R B, et al. 2015. Microbial and sponge loops modify fish production in phase-shifting coral reefs. Environmental Microbiology, 17(10): 3832–3846. doi: 10.1111/1462-2920.12851
|
Starke C, Ekau W, Moosdorf N. 2020. Enhanced productivity and fish abundance at a submarine spring in a coastal lagoon on Tahiti, French Polynesia. Frontiers in Marine Science, 6: 809. doi: 10.3389/fmars.2019.00809
|
Staunton Smith J, Johnson C R. 1995. Nutrient inputs from seabirds and humans on a populated coral cay. Marine Ecology Progress Series, 124: 189–200. doi: 10.3354/meps124189
|
Suzuki A, Kawahata H. 2003. Carbon budget of coral reef systems: an overview of observations in fringing reefs, barrier reefs and atolls in the Indo-Pacific regions. Tellus B: Chemical and Physical Meteorology, 55(2): 428–444. doi: 10.3402/tellusb.v55i2.16761
|
Suzuki A, Kawahata H, Ayukai T, et al. 2001. The oceanic CO2 system and carbon budget in the Great Barrier Reef, Australia. Geophysical Research Letters, 28(7): 1243–1246. doi: 10.1029/2000GL011875
|
Tait D R, Erler D V, Santos I R, et al. 2014. The influence of groundwater inputs and age on nutrient dynamics in a coral reef lagoon. Marine Chemistry, 166: 36–47. doi: 10.1016/j.marchem.2014.08.004
|
Tanaka Y, Miyajima T, Koike I, et al. 2008. Production of dissolved and particulate organic matter by the reef-building corals Porites cylindrica and Acropora pulchra. Bulletin of Marine Science, 82(2): 237–245
|
Tanaka Y, Miyajima T, Watanabe A, et al. 2011a. Distribution of dissolved organic carbon and nitrogen in a coral reef. Coral Reefs, 30(2): 533–541. doi: 10.1007/s00338-011-0735-5
|
Tanaka Y, Ogawa H, Miyajima T. 2011b. Production and bacterial decomposition of dissolved organic matter in a fringing coral reef. Journal of Oceanography, 67(4): 427–437. doi: 10.1007/s10872-011-0046-z
|
Thornhill D J, Rotjan R D, Todd B D, et al. 2011. A connection between colony biomass and death in Caribbean reef-building corals. PLoS ONE, 6(12): e29535. doi: 10.1371/journal.pone.0029535
|
Tilstra A, van Hoytema N, Cardini U, et al. 2018. Effects of water column mixing and stratification on planktonic primary production and dinitrogen fixation on a northern Red Sea coral reef. Frontiers in Microbiology, 9: 2351. doi: 10.3389/fmicb.2018.02351
|
Torréton J P, Dufour P. 1996. Temporal and spatial stability of bacterioplankton biomass and productivity in an atoll lagoon. Aquatic Microbial Ecology, 11: 251–261. doi: 10.3354/ame011251
|
Torréton J P, Pagès J, Talbot V. 2002. Relationships between bacterioplankton and phytoplankton biomass, production and turnover rate in Tuamotu atoll lagoons. Aquatic Microbial Ecology, 28: 267–277. doi: 10.3354/ame028267
|
Turk-Kubo K A, Frank I E, Hogan M E, et al. 2015. Diazotroph community succession during the VAHINE mesocosm experiment (New Caledonia lagoon). Biogeosciences, 12(24): 7435–7452. doi: 10.5194/bg-12-7435-2015
|
Uthicke S. 2001a. Interactions between sediment-feeders and microalgae on coral reefs: grazing losses versus production enhancement. Marine Ecology Progress Series, 210: 125–138. doi: 10.3354/meps210125
|
Uthicke S. 2001b. Nutrient regeneration by abundant coral reef holothurians. Journal of Experimental Marine Biology and Ecology, 265(2): 153–170. doi: 10.1016/S0022-0981(01)00329-X
|
Vega Thurber R L, Burkepile D E, Fuchs C, et al. 2014. Chronic nutrient enrichment increases prevalence and severity of coral disease and bleaching. Global Change Biology, 20: 544–554
|
Venn A A, Loram J E, Douglas A E. 2008. Photosynthetic symbioses in animals. Journal of Experimental Botany, 59(5): 1069–1080. doi: 10.1093/jxb/erm328
|
Ware J R, Smith S V, Reaka-Kudla M L. 1992. Coral reefs: sources or sinks of atmospheric CO2?. Coral Reefs, 11(3): 127–130
|
Weber L, Gonzalez-Díaz P, Armenteros M, et al. 2019. The coral ecosphere: a unique coral reef habitat that fosters coral–microbial interactions. Limnology and Oceanography, 64(6): 2373–2388. doi: 10.1002/lno.11190
|
Wiebe W J, Johannes R E, Webb K L. 1975. Nitrogen fixation in a coral reef community. Science, 188(4185): 257–259. doi: 10.1126/science.188.4185.257
|
Wild C, Huettel M, Klueter A, et al. 2004a. Coral mucus functions as an energy carrier and particle trap in the reef ecosystem. Nature, 428(6978): 66–70. doi: 10.1038/nature02344
|
Wild C, Niggl W, Naumann M S, et al. 2010. Organic matter release by Red Sea coral reef organisms—potential effects on microbial activity and in situ O2 availability. Marine Ecology Progress Series, 411: 61–71. doi: 10.3354/meps08653
|
Wild C, Rasheed M, Werner U, et al. 2004b. Degradation and mineralization of coral mucus in reef environments. Marine Ecology Progress Series, 267: 159–171. doi: 10.3354/meps267159
|
Wilkinson C R, Fay P. 1979. Nitrogen fixation in coral reef sponges with symbiotic cyanobacteria. Nature, 279(5713): 527–529. doi: 10.1038/279527a0
|
Williams I D, Baum J K, Heenan A, et al. 2015. Human, oceanographic and habitat drivers of central and western Pacific coral reef fish assemblages. PLoS ONE, 10(4): e0120516. doi: 10.1371/journal.pone.0120516
|
Williams J J, Papastamatiou Y P, Caselle J E, et al. 2018. Mobile marine predators: an understudied source of nutrients to coral reefs in an unfished atoll. Proceedings of the Royal Society B: Biological Sciences, 285(1875): 20172456. doi: 10.1098/rspb.2017.2456
|
Wu Chengye, Zhang Jianlin, Huang Liangmin. 2001. Primary productivity in some coral reef lagoons and their adjacent sea areas of Nansha Islands in spring. Journal of Tropical Oceanography (in Chinese), 20(3): 59–67
|
Wyatt A S J, Falter J L, Lowe R J, et al. 2012. Oceanographic forcing of nutrient uptake and release over a fringing coral reef. Limnology and Oceanography, 57(2): 401–419. doi: 10.4319/lo.2012.57.2.0401
|
Wyatt A S J, Leichter J J, Toth L T, et al. 2020. Heat accumulation on coral reefs mitigated by internal waves. Nature Geoscience, 13(1): 28–34. doi: 10.1038/s41561-019-0486-4
|
Wyatt A S J, Lowe R J, Humphries S, et al. 2010. Particulate nutrient fluxes over a fringing coral reef: relevant scales of phytoplankton production and mechanisms of supply. Marine Ecology Progress Series, 405: 113–130. doi: 10.3354/meps08508
|
Wyatt A S J, Lowe R J, Humphries S, et al. 2013. Particulate nutrient fluxes over a fringing coral reef: Source-sink dynamics inferred from carbon to nitrogen ratios and stable isotopes. Limnology and Oceanography, 58(1): 409–427. doi: 10.4319/lo.2013.58.1.0409
|
Xu Shendong, Zhang Zhinan, Yu Kefu, et al. 2021. Spatial variations in the trophic status of Favia palauensis corals in the South China Sea: insights into their different adaptabilities under contrasting environmental conditions. Science China: Earth Sciences, 64(6): 839–852. doi: 10.1007/s11430-020-9774-0
|
Yahel G, Post A F, Fabricius K, et al. 1998. Phytoplankton distribution and grazing near coral reefs. Limnology and Oceanography, 43(4): 551–563. doi: 10.4319/lo.1998.43.4.0551
|
Yamaguchi R, Suga T. 2019. Trend and variability in global upper-ocean stratification since the 1960s. Journal of Geophysical Research: Oceans, 124(12): 8933–8948. doi: 10.1029/2019JC015439
|
Yan Hongqiang, Yu Kefu, Shi Qi, et al. 2016. Seasonal variations of seawater pCO2 and sea-air CO2 fluxes in a fringing coral reef, northern South China Sea. Journal of Geophysical Research: Oceans, 121(1): 998–1008. doi: 10.1002/2015JC011484
|
Zaneveld J R, Burkepile D E, Shantz A A, et al. 2016. Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales. Nature Communications, 7: 11833
|
Zhang Fan, Blasiak L C, Karolin J O, et al. 2015. Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges. Proceedings of the National Academy of Sciences of the United States of America, 112(14): 4381–4386. doi: 10.1073/pnas.1423768112
|