Seasonal meltwater input creates a thin freshen layer in surface seawater under ice, which largely shifts the algae assemblages. Our recent observation of photosynthetic pigments in the high Arctic showed that ice bottom and 5 m of seawater under ice contained relatively high concentration of fucoxanthin, while chlorophyll b and lutein were the major diagnostic pigments in ice-water interface and 0 m of seawater under ice. Additionally, a notable change of dominant phytoplankton occurred in the top 5 m of seawater under ice, from chlorophytes-dominated at surface to diatoms-dominated at 5 m depth, which might attribute to the sharp salinity gradient (salinity from 12.5 to 28.1) in the surface seawater under ice. Our results imply that phytoplankton community in surface layer under ice would become more chlorophytes in the future warming Arctic Ocean.

Water samples were collected in order to study the spatial variation of photosynthetic pigments and phytoplankton community composition in the Lembeh Strait (Indonesia) and the Kelantan River Estuary (Malaysia) during July and August 2016, respectively. Phytoplankton photosynthetic pigments were detected using high performance liquid chromatography combining with the CHEMTAX software to confirm the Chl a biomass and community composition. The Chl a concentration was low at surface in the Lembeh Strait, which it was 0.580-0.682 μg/L, with the average (0.620±0.039) μg/L. Nevertheless, the Chl a concentration fluctuated violently at surface in the Kelantan River Estuary, in which the biomass was 0.299-3.988 μg/L, with the average (0.922±0.992) μg/L. The biomass at bottom water was higher than at surface in the Kelantan River Estuary, in which the Chl a concentration was 0.704-2.352 μg/L, with the average (1.493±0.571) μg/L. Chl b, zeaxanthin and fucoxanthin were three most abundant pigments in the Lembeh Strait. As a consequence, phytoplankton community composition was different in the two study areas. In the Lembeh Strait, prasinophytes (26.48%±0.83%) and Synechococcus (25.73%±4.13%) occupied ~50% of the Chl a biomass, followed by diatoms (20.49%±2.34%) and haptophytes T8 (15.13%±2.42%). At surface water in the Kelantan River Estuary, diatoms (58.53%±18.44%) dominated more than half of the phytoplankton biomass, followed by Synechococcus (27.27%±14.84%) and prasinophytes (7.00%±4.39%). It showed the similar status at the bottom water in the Kelantan River Estuary, where diatoms, Synechococcus and prasinophytes contributed 64.89%±15.29%, 16.23%±9.98% and 8.91%±2.62%, respectively. The different phytoplankton community composition between the two regions implied that the bottom up control affected the phytoplankton biomass in the Lembeh Strait where the oligotrophic water derived from the West Pacific Ocean. The terrigenous nutrients supplied the diatoms growing, and pico-phytoplankton was grazed through top down control in the Kelantan River Estuary.

Bacterial abundance, phytoplankton community structure and environmental parameters were investigated to study the relationships between bacteria and phytoplankton during giant jellyfish Nemopilema nomurai blooms in the central Yellow Sea during 2013. N. nomurai appeared in June, increased in August, reached a peak and began to degrade in September 2013. Results showed that phosphate was possible a key nutrient for both phytoplankton and bacteria in June, but it changed to nitrate in August and September. Phytoplankton composition significantly changed that pico-phytoplankton relative biomass significantly increased, whereas other size phytoplankton significantly decreased during jellyfish bloom. In June, a significantly positive correlation was observed between chlorophyll a concentration and bacterial abundance (r=0.67, P<0.001, n=34). During jellyfish outbreak in August, there was no significant correlation between phytoplankton and bacteria (r=0.11, P>0.05, n=25), but the relationship (r=0.71, P<0.001, n=31) was rebuilt with jellyfish degradation in September. In August, small size phytoplankton occupied the mixed layer in offshore stations, while bacteria almost distributed evenly in vertical. chlorophyll a concentration significantly increased from (0.42±0.056) μg/L in June to (0.74±0.174) μg/L in August, while bacterial abundance just slightly increased. Additionally, the negative net community production indicated that community respiration was not entirely determined by the local primary productivity in August. These results indicated that jellyfish blooms potentially affect coupling of phytoplankton and bacteria in marine ecosystems.

Using a suitable solvent for extracting pigments from sediment for high performance liquid chromatography (HPLC) analysis is critical for obtaining qualitative and quantitative estimates of phytoplanktonic and benthic algal biomass, as well as community composition. Five methodological factors (sample dehydration, extraction solvent, extraction duration, number of extractions, and ratio of solvent volume:sample weight) were studied using an L₉ (3⁴) orthogonal design in a sedimentary pigment extraction experiment on samples collected from the Changjiang large-river delta-front estuary (LDE), using HPLC analysis. The results show that the optimal extraction method for sedimentary pigments should include freeze-drying samples prior to extraction. The effects of different factors on sedimentary pigment extraction were separated by the L₉ (3⁴) orthogonal design experiments and showed that the extraction solvent was the most important, with extraction duration the second most important, and numbers of extraction and ratio of solvent volume:sample weight was the least important. The mixed solvent treatment comprised of acetone, methanol and water (80:15:5, by volume) was best for polar pigment extraction, with 100% acetone better for apolar pigments. For most pigments employed in this study (i.e., peridinin, fucoxanthin, alloxanthin, diatoxanthin, zeaxanthin, pheophytin-a and β-carotene), 3 h was found to be enough time for extraction from these deltaic sediments. However, for chlorophyll-a, the most important pigment used for estimating algal biomass, 12 h was needed. A small amount of solvent (3 ml) with duplicate extractions obtained the greatest amount and diversity of pigments. Unfortunately, no extraction method was found to be suitable for all pigments in sediments. The choice of extraction procedure should be made in accordance with the objective of each study, taking into consideration the properties of sediments and pigments in question.

Data from three cruises conducted in the Zhujiang River (ZR), coastal waters of Guangdong (CWGD) and the northern South China Sea (NSCS) during 2003 and 2004 were examined for assessing the relative importance of pigment composition and packaging effect in modifying the specific absorption coefficients of phytoplankton.The three survey regions differ widely in their phytoplankton community with large cells dominating the ZR and CWGD waters and small cells dominating the NSCS region.Variations in the size structure and the accessory pigments have much effect on the chlorophyll a-specific absorption coefficient of phytoplankton.The size index accounted for about 42% and 33% of the variation of the specific absorption coefficient at 440 and 675 nm, respectively.Using the multiple regression analysis approach, pigment concentrations for each sample were calculated.The accessory pigments other than chlorophyll a contribute to absorption mainly in the blue-to-green region of the spectrum and their absorptions account for about 44%, 43% and 53% on the average of the total phytoplankton absorption at 440 nm for the ZR, CWGD and NSCS regions.Among the accessory pigments, the photosynthetic carotenoids (noted PSC) play a dominant role in the ZR and CWGD waters, while in the NSCS the nonphotosynthetic carotenoids (noted PPC) as well as PSC have important contributions.Because the variations of both the size structure and accessory pigments in algal populations contributed to the variability of the specific absorption coefficient in the study regions, these factors may be considered explicitly in future bio-optical algorithms to derive chlorophyll a concentration more accurately.

Sea cucumber, Apostichopus japonicus (Selenka), is a commercially important marine species in China. Among the differently colored varieties sold in China, white and purple sea cucumbers have the greatest appeal to consumers. Identification of the pigments that may contribute to the formation of different color morphs of sea cucumbers will provide a scientific basis for improving the cultivability of desirable color morphs. In this study, sea cucumbers were divided into four categories according to their body color: white, light green, dark green, and purple. The pigment composition and contents in the four groups were analyzed by high performance liquid chromatography (HPLC). The results show that the pigment contents differed significantly among the white, light-green, dark-green, and purple sea cucumbers, and there were fewer types of pigments in white sea cucumber than in the other color morphs. The only pigments detected in white sea cucumbers were guanine and pteroic acid. Guanine and pteroic acid are structural colors, and they were also detected in light-green, dark-green, and purple sea cucumbers. Every pigment detected, except for pteroic acid, was present at a higher concentration in purple morphs than in the other color morphs. The biological color pigments melanin, astaxanthin, β-carotene, and lutein were detected in light-green, dark-green, and purple sea cucumbers. While progesterone and lycopene, which are also biological color pigments, were not detected in any of the color morphs. Melanin was the major pigment contributing to body color, and its concentration increased with deepening color of the sea cucumber body. Transmission electron microscopy analyses revealed that white sea cucumbers had the fewest epidermal melanocytes in the body wall, and their melanocytes contained fewer melanosomes as well as non-pigmented pre-melanosomes. Sea cucumbers with deeper body colors contained more melanin granules. In the body wall of dark-green and purple sea cucumbers, melanin granules were secreted out of the cell. The results of this study provide evidence for the main factors responsible for differences in coloration among white, light-green, dark-green, and purple sea cucumbers, and also provide the foundation for further research on the formation of body color in sea cucumber, A. japonicus.

The photosynthetic pigments of 12 species (14 strains) of cultured diatoms from six genera under specific conditions were examined by the HPLC.The diatom genera were Skeletonema,Thalassiosira,Chaetoceros,Nitzschia,Phaeodactylum and Meuniera.All strains were isolated from China seas and most of them were from the Jiaozhou Bay,China.Fifteen pigments were identified and eight of them were various chlorophyll a derivatives.Chlorophyll a,c₂ and c₁ and the carotenoids fucoxanthin,diadinoxanthin,diatoxanthin and β,β-carotene existed in all species.The ratios of each pigment to chlorophyll a were compared with the results in literatures.The pigment ratios of this study generally fall within the ranges reported by the literatures although the maximum ratio of fucoxanthin to chlorophyll a was higher and the ratios of chlorophyll c and diatoxanthin to chlorophyll a were low.The pigment ratios are useful to understanding the pigment signatures of diatoms in the Jiaozhou Bay,China,and to setting up the chemotaxonomic method ofphytoplankton in these sea areas.

Remote sensing applications are important in the fisheries sector and efforts were on to improve the predictions of potential fishing zones using ocean color. The present study was aimed to investigate the phytoplankton dynamics and their absorption properties in the coastal waters of the southeastern Arabian Sea in different seasons during the year 2010 to 2011. The region exhibited 73 genera of phytoplankton from 19 orders and 41 families. The numerical abundance of phytoplankton varied from 14.235×10³ to 55.075×10⁶ cells/L. Centric diatoms dominated in the region and the largest family identified was Thalassiosiraceae with main genera as Skeletonema spp., Planktionella spp. and Thalassiosira spp. Annual variations in abundance of phytoplankton showed a typical one-peak cycle, with the highest recorded during premonsoon season and the lowest during monsoon season. The species diversity index of phytoplankton exhibited low diversity during monsoon season. Phytoplankton with pigments Chlorophyll a, Chlorophyll b, Chlorophyll c, peridinin, diadinoxanthin, fucoxanthin, β-carotene and phycoerythrobilin dominated in these waters. The knowledge on phytoplankton dynamics in coastal waters of the southeastern Arabian Sea forms a key parameter in bio-optical models of pigments and productivity and for the interpretation of remotely sensed ocean color data.

One strain of unicellular greenish algae embedded by mucilage was successfully isolated from equatorial area in the Indian Ocean. Microscopic observation, ultrastructure features and genetic identification confirmed that the strain was closely related to Cyanothece sp., which was a cyanobacteria species with great ecological significance. Cells were solitary with oval or bacilliform shapes. Diameters of this strain were relatively small, ranging from 2.5 to 6.5 μm on average. Ultrastructure of cells was simple. Thylakoids were arranged parietal and keritomized content were observed in the thylakoid region. Various electron-transparent granules with low electron-dense region as well as cyanophycin or glycogen granules-like organelle and carbonxysomes were also observed. For pigment composition, the dominant pigments were chlorophyll a, β-Carotene, Zeaxanthin and an unknown pigment, contributing 23.8%, 26.1%, 14.7% and 15.7% to total pigments respectively. The phylogenetic analysis of 16S rRNA gene and nifH gene confirmed that Strain EIO409 was closely related with Cyanothece sp..

The spatial variations of phytoplankton community structure in the Xiamen Western Bay during the summer and autumn cruises in 2001 were investigated based on HPLC analysis of photosynthetic pigments in algal cells and CHEMTAX processing of pigment data. The Chl a concentration reached 18.9 μg/L in the summer and declined to 0.28-2.17 in the autumn, respectively, consistent with the observation of diatom blooms in June. Among the accessory pigments, fucoxanthin was consistently the most abundant, ranging from 0.172 to 8.46 μg/L, with the maximum concentrations in June. 19'-hexfucoxanthin and alloxanthin were the other two abundant pigments in the summer and autumn. In addition, 19'-butanoyloxyfucoxanthin or peridinin was also important in late autumn. Generally the biomass of all the phytoplankton or each group was higher in the inner part than the mouth of this bay, represented by Chl a. CHEMTAX processing revealed the dominance of diatoms with their contribution of 14.6%-52.5% to the total Chl a, but its importance decreased in the autumn. Cryptophytes and Haptophytes, with an average contribution of 16.9%-31.4% and 12.1%-26.3%, were the other two important groups, especially in the autumn. On the contrary, Dinoflagellates and Chlorophytes were the minor groups, but the former became important sporadically in the autumn. It was suggested that there was distinctive variation in both the phytoplankton community structure and biomass between summer and autumn in the Xiamen Western Bay and the latter was coupled to the changes in temperature and dissolved oxygen. However, the spatial variation of the phytoplankton community structure was not as clear as the trend in the biomass of phytoplankton among all the sites in this bay.